Transcript: lnc-PREX1-5:1

Basic information

LNCipedia transcript ID: lnc-PREX1-5:1 
LNCipedia gene ID: lnc-PREX1-5
Ensembl Gene ID: ENSG00000236874
Ensembl Transcript ID: ENST00000446280
Location (hg38): chr20:48383323-48384895
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028059; ENST00000446280; ENST00000446280.1; RP1-66N13.1-001; OTTHUMT00000079615.1; NONHSAT080145
Alternative gene names: XLOC_013776; linc-SULF2-1; ENSG00000236874; RP1-66N13.1; ENSG00000236874.1; OTTHUMG00000032680.1; AL137078.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.6765 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREX1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PREX1-5:1
3.1 lnc-PREX1-5:1
4.0 lnc-PREX1-5:1
4.1 lnc-PREX1-5:1
5.0 lnc-PREX1-5:1
5.1 lnc-SULF2-21:1
5.2 lnc-PREX1-5:1