Transcript: lnc-PRDX3-1:4

Basic information

LNCipedia transcript ID: lnc-PRDX3-1:4 
LNCipedia gene ID: lnc-PRDX3-1
Ensembl Gene ID: ENSG00000236426
Ensembl Transcript ID: ENST00000630276
Location (hg38): chr10:119333181-119335957
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 683 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630276.1
Alternative gene names: ENSG00000236426.5; RP11-79M19.2; AL583824.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -124.545 non-coding 
CPAT coding probability 6.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDX3-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PRDX3-1:4
4.1 lnc-PRDX3-1:4
5.0 lnc-PRDX3-1:4
5.1 lnc-NSMCE4A-51:4
5.2 lnc-PRDX3-1:4