Transcript: lnc-PRDM9-2:4

Basic information

LNCipedia transcript ID: lnc-PRDM9-2:4 
LNCipedia gene ID: lnc-PRDM9-2
Ensembl Gene ID: ENSG00000251294
Ensembl Transcript ID: ENST00000510391
Location (hg38): chr5:24554018-24613222
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1791 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510391.1; RP11-116O11.1-001; OTTHUMT00000366279.1; NONHSAT100755
Alternative gene names: ENSG00000251294.1; RP11-116O11.1; OTTHUMG00000161879.1; AC091885.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.1865 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf17-2:1
4.0 lnc-C5orf17-2:1
4.1 lnc-C5orf17-2:1
5.0 lnc-C5orf17-2:1
5.1 lnc-CARD6-159:1
5.2 lnc-PRDM9-2:4