Transcript: lnc-PRDM9-15:1

Basic information

LNCipedia transcript ID: lnc-PRDM9-15:1 
LNCipedia gene ID: lnc-PRDM9-15
Location (hg38): chr5:20647584-20718223
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1239 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_2888_chr5:20647692-20718079_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2646 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-15:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM9-15:1
4.0 lnc-PRDM9-15:1
4.1 lnc-PRDM9-15:1
5.0 lnc-PRDM9-15:1
5.1 lnc-CARD6-177:1
5.2 lnc-PRDM9-15:1