Transcript: lnc-PRDM9-10:6

Basic information

LNCipedia transcript ID: lnc-PRDM9-10:6 
LNCipedia gene ID: lnc-PRDM9-10
Location (hg38): chr5:22142352-22152261
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 875 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT100732
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.275 non-coding 
CPAT coding probability 10.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-10:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM9-10:6
4.0 lnc-PRDM9-10:6
4.1 lnc-PRDM9-10:6
5.0 lnc-PRDM9-10:6
5.1 lnc-CARD6-168:6
5.2 lnc-PRDM9-10:6