Transcript: lnc-PRDM2-8:2

Basic information

LNCipedia transcript ID: lnc-PRDM2-8:2 
LNCipedia gene ID: lnc-PRDM2-8
Location (hg38): chr1:14205479-14206373
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 649 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000842; NONHSAT000993
Alternative gene names: XLOC_000057; linc-KAZ


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.3577 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM2-8:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf196-1:1
3.1 lnc-C1orf196-1:1
4.0 lnc-C1orf196-1:1
4.1 lnc-C1orf196-1:1
5.0 lnc-C1orf196-1:1
5.1 lnc-PRDM2-4:2
5.2 lnc-PRDM2-8:2