Transcript: lnc-PRC1-1:1

Basic information

LNCipedia transcript ID: lnc-PRC1-1:1 
LNCipedia gene ID: lnc-PRC1-1
Ensembl Gene ID: ENSG00000258384
Ensembl Transcript ID: ENST00000553321
Location (hg38): chr15:90952239-90955225
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1858 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553321; ENST00000553321.1; AC068831.6-001; OTTHUMT00000414747.1; NONHSAT048451
Alternative gene names: ENSG00000258384; AC068831.6; ENSG00000258384.1; OTTHUMG00000171683.1; AC068831.3; AC068831.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 157.825 coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRC1-1:1
3.1 lnc-PRC1-1:1
4.0 lnc-PRC1-1:1
4.1 lnc-PRC1-1:1
5.0 lnc-PRC1-1:1
5.1 lnc-CIB1-15:3
5.2 lnc-PRC1-1:1

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