Transcript: lnc-PRAG1-2:1

Basic information

LNCipedia transcript ID: lnc-PRAG1-2:1 
LNCipedia gene ID: lnc-PRAG1-2
Ensembl Gene ID: ENSG00000254153
Ensembl Transcript ID: ENST00000521218
Location (hg38): chr8:8456909-8461337
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521218; ENST00000521218.1; CTA-398F10.2-001; OTTHUMT00000375022.1; NONHSAT124874
Alternative gene names: ENSG00000254153; CTA-398F10.2; ENSG00000254153.1; OTTHUMG00000163731.1; AC103957.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.9611 non-coding 
CPAT coding probability 53.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRAG1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRAGMIN.1-2:1
3.1 lnc-PRAGMIN.1-2:1
4.0 lnc-PRAGMIN.1-2:1
4.1 lnc-PRAGMIN.1-2:1
5.0 lnc-PRAGMIN.1-2:1
5.1 lnc-DEFA1B-45:1
5.2 lnc-PRAG1-2:1