Transcript: lnc-PRAG1-1:2

Basic information

LNCipedia transcript ID: lnc-PRAG1-1:2 
LNCipedia gene ID: lnc-PRAG1-1
Ensembl Gene ID: ENSG00000253505
Ensembl Transcript ID: ENST00000517681
Location (hg38): chr8:8414690-8424578
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517681; ENST00000517681.1; CTA-398F10.1-001; OTTHUMT00000375020.1
Alternative gene names: ENSG00000253505; CTA-398F10.1; ENSG00000253505.1; OTTHUMG00000163730.1; AC103957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -297.7951 non-coding 
CPAT coding probability 10.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAG1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRAGMIN.1-1:2
3.1 lnc-PRAGMIN.1-1:2
4.0 lnc-PRAGMIN.1-1:2
4.1 lnc-PRAGMIN.1-1:2
5.0 lnc-PRAGMIN.1-1:2
5.1 lnc-DEFA1B-44:2
5.2 lnc-PRAG1-1:2