Transcript: lnc-PPP1R3G-9:3

Basic information

LNCipedia transcript ID: lnc-PPP1R3G-9:3 
LNCipedia gene ID: lnc-PPP1R3G-9
Location (hg38): chr6:5029972-5043448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1085 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000502507; TCONS_00011155; NONHSAT107502
Alternative gene names: ENSG00000250255; XLOC_005143; linc-PPP1R3G;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5756 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3G-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R3G-2:1
3.1 lnc-PPP1R3G-2:1
4.0 LYRM4-AS1:6
4.1 LYRM4-AS1:6
5.0 LYRM4-AS1:6
5.1 lnc-PRPF4B-160:3
5.2 lnc-PPP1R3G-9:3