Transcript: lnc-PPM1H-1:2

Basic information

LNCipedia transcript ID: lnc-PPM1H-1:2 
LNCipedia gene ID: lnc-PPM1H-1
Ensembl Gene ID: ENSG00000257235
Ensembl Transcript ID: ENST00000552996
Location (hg38): chr12:63004338-63006541
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 535 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552996; ENST00000552996.1; RP11-848D3.5-001; OTTHUMT00000406731.1; NONHSAT029104
Alternative gene names: ENSG00000257235; RP11-848D3.5; ENSG00000257235.1; OTTHUMG00000169978.1; AC078814.2; AC078814.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.8709 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1H-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPM1H-1:2
3.1 lnc-PPM1H-1:2
4.0 lnc-PPM1H-1:2
4.1 lnc-PPM1H-1:2
5.0 lnc-PPM1H-1:2
5.1 lnc-PPM1H-1:2
5.2 lnc-PPM1H-1:2