Transcript: lnc-PPIF-1:1

Basic information

LNCipedia transcript ID: lnc-PPIF-1:1 
LNCipedia gene ID: lnc-PPIF-1
Location (hg38): chr10:79382328-79409274
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438554.1; RP11-342M3.5-001; OTTHUMT00000048955.1; NONHSAT015105
Alternative gene names: ENSG00000235426.1; RP11-342M3.5; OTTHUMG00000018564.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -261.6769 non-coding 
CPAT coding probability 8.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIF-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIF-1:1
4.0 lnc-PPIF-1:1
4.1 lnc-PPIF-1:1
5.0 lnc-PPIF-1:1
5.1 lnc-MTRNR2L5-238:1
5.2 lnc-PPIF-1:1