Transcript: lnc-PPIE-11:1

Basic information

LNCipedia transcript ID: lnc-PPIE-11:1 
LNCipedia gene ID: lnc-PPIE-11
Location (hg38): chr1:39840007-39840620
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 614 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT002607; FPKM1_group_446_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -351.7143 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIE-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIE-11:1
4.0 lnc-PPIE-11:1
4.1 lnc-PPIE-11:1
5.0 lnc-PPIE-11:1
5.1 lnc-PPIE-11:1
5.2 lnc-PPIE-11:1