Transcript: lnc-PPIAL4C-4:28

Basic information

LNCipedia transcript ID: lnc-PPIAL4C-4:28 
LNCipedia gene ID: lnc-PPIAL4C-4
Location (hg38): chr1:149664542-149665328
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000449092; ENST00000449092.1; BX248398.1-010; OTTHUMT00000038293.1; NONHSAT005775
Alternative gene names: ENSG00000235398; BX248398.1; ENSG00000235398.1; OTTHUMG00000013624.4; ENSG00000235398.4; LINC00623;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.9616 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4C-4:28 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4B-1:18
3.1 lnc-PPIAL4B-1:18
4.0 LINC00623:38
4.1 LINC00623:38
5.0 LINC00623:38
5.1 lnc-FCGR1A-4:19
5.2 lnc-PPIAL4C-4:28