Transcript: lnc-PPDPFL-6:1

Basic information

LNCipedia transcript ID: lnc-PPDPFL-6:1 
LNCipedia gene ID: lnc-PPDPFL-6
Ensembl Gene ID: ENSG00000253849
Ensembl Transcript ID: ENST00000523907
Location (hg38): chr8:50381015-50382275
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 434 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523907.1; RP11-759A9.1-001; OTTHUMT00000377970.1; NONHSAT126525
Alternative gene names: ENSG00000253849.1; RP11-759A9.1; OTTHUMG00000164258.1; AC090539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2329 non-coding 
CPAT coding probability 12.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf22-6:1
4.0 lnc-C8orf22-6:1
4.1 lnc-C8orf22-6:1
5.0 lnc-C8orf22-6:1
5.1 lnc-SDCBP-97:1
5.2 lnc-PPDPFL-6:1