Transcript: lnc-PPDPFL-5:4

Basic information

LNCipedia transcript ID: lnc-PPDPFL-5:4 
LNCipedia gene ID: lnc-PPDPFL-5
Location (hg38): chr8:48590401-48787661
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3635 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000536671; ENST00000536671.1; AC026904.1-201; NONHSAT126486
Alternative gene names: ENSG00000233858; AC026904.1; ENSG00000233858.3; OTTHUMG00000141277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.8826 non-coding 
CPAT coding probability 87.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPDPFL-5:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-5:2
3.1 lnc-C8orf22-5:2
4.0 lnc-C8orf22-5:2
4.1 lnc-C8orf22-5:2
5.0 lnc-C8orf22-5:2
5.1 lnc-SDCBP-112:4
5.2 lnc-PPDPFL-5:4