Transcript: lnc-PPDPFL-5:3

Basic information

LNCipedia transcript ID: lnc-PPDPFL-5:3 
LNCipedia gene ID: lnc-PPDPFL-5
Ensembl Gene ID: ENSG00000233858
Ensembl Transcript ID: ENST00000430626
Location (hg38): chr8:48590401-48594621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3549 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00014541; ENST00000430626; ENST00000430626.1; AC026904.1-001; OTTHUMT00000280498.1; NONHSAT126487
Alternative gene names: XLOC_006789; linc-C8orf22-3; ENSG00000233858; AC026904.1; ENSG00000233858.3; OTTHUMG00000141277.1; ENSG00000233858.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.8826 non-coding 
CPAT coding probability 87.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPDPFL-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-5:1
3.1 lnc-C8orf22-5:1
4.0 lnc-C8orf22-5:1
4.1 lnc-C8orf22-5:1
5.0 lnc-C8orf22-5:1
5.1 lnc-SDCBP-112:3
5.2 lnc-PPDPFL-5:3