Transcript: lnc-PPDPFL-2:10

Basic information

LNCipedia transcript ID: lnc-PPDPFL-2:10 
LNCipedia gene ID: lnc-PPDPFL-2
Ensembl Gene ID: ENSG00000253474
Ensembl Transcript ID: ENST00000519828
Location (hg38): chr8:49168682-49225029
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519828; ENST00000519828.1; RP11-10H3.1-001; OTTHUMT00000377821.1; NONHSAT126510
Alternative gene names: ENSG00000253474; RP11-10H3.1; ENSG00000253474.1; OTTHUMG00000164208.1; AC022568.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.6169 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf22-2:4
3.1 lnc-C8orf22-2:4
4.0 lnc-C8orf22-2:4
4.1 lnc-C8orf22-2:4
5.0 lnc-C8orf22-2:4
5.1 lnc-SDCBP-103:10
5.2 lnc-PPDPFL-2:10