Transcript: lnc-PPDPFL-16:4

Basic information

LNCipedia transcript ID: lnc-PPDPFL-16:4 
LNCipedia gene ID: lnc-PPDPFL-16
Location (hg38): chr8:48921557-48933269
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3643 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098782.1|MICT00000343581.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -34.4837 non-coding 
CPAT coding probability 10.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-16:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C8orf22-16:4
5.0 lnc-C8orf22-16:4
5.1 lnc-SDCBP-105:4
5.2 lnc-PPDPFL-16:4