Transcript: lnc-PPDPFL-16:2

Basic information

LNCipedia transcript ID: lnc-PPDPFL-16:2 
LNCipedia gene ID: lnc-PPDPFL-16
Location (hg38): chr8:48921557-48922759
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 715 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098782.1|FTMT23100031301.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -316.4691 non-coding 
CPAT coding probability 11.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-16:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C8orf22-16:2
5.0 lnc-C8orf22-16:2
5.1 lnc-SDCBP-105:2
5.2 lnc-PPDPFL-16:2