Transcript: lnc-POU5F2-5:1

Basic information

LNCipedia transcript ID: lnc-POU5F2-5:1 
LNCipedia gene ID: lnc-POU5F2-5
Ensembl Gene ID: ENSG00000251023
Ensembl Transcript ID: ENST00000505668
Location (hg38): chr5:93860669-93863825
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3157 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505668.1; RP11-549J18.1-001; OTTHUMT00000370529.1; NONHSAT102818
Alternative gene names: ENSG00000251023.1; RP11-549J18.1; OTTHUMG00000162817.1; AC114980.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0137 non-coding 
CPAT coding probability 41.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-POU5F2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0825-1:1
4.0 lnc-KIAA0825-1:1
4.1 lnc-KIAA0825-5:1
5.0 lnc-KIAA0825-5:1
5.1 lnc-ANKRD34B-183:1
5.2 lnc-POU5F2-5:1