Transcript: lnc-POU5F1-7:1

Basic information

LNCipedia transcript ID: lnc-POU5F1-7:1 
LNCipedia gene ID: lnc-POU5F1-7
Ensembl Gene ID: ENSG00000271821
Ensembl Transcript ID: ENST00000606909
Location (hg38): chr6:31200165-31201918
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011481; ENST00000414008; ENST00000414008.1; LINC00481-001; OTTHUMT00000257969.1; NONHSAT108741; ENST00000606909.1
Alternative gene names: XLOC_005678; linc-POU5F1-2; ENSG00000232703; HCG27-IT1; ENSG00000232703.1; LINC00481; OTTHUMG00000133706.1; ENSG00000271821.1; XXbac-BPG299F13.14; AL662844.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.1946 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU5F1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU5F1-1:1
3.1 lnc-POU5F1-7:1
4.0 lnc-POU5F1-7:1
4.1 lnc-POU5F1-7:1
5.0 lnc-POU5F1-7:1
5.1 lnc-PSORS1C2-7:1
5.2 lnc-POU5F1-7:1