Transcript: lnc-POU2AF1-1:4

Basic information

LNCipedia transcript ID: lnc-POU2AF1-1:4 
LNCipedia gene ID: lnc-POU2AF1-1
Ensembl Gene ID: ENSG00000196167
Ensembl Transcript ID: ENST00000526150
Location (hg38): chr11:111298343-111300009
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 391 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT024094; ENST00000526150.1
Alternative gene names: ENSG00000196167.9; COLCA1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.8297 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU2AF1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POU2AF1-1:1
4.0 lnc-C11orf92-1:4
4.1 lnc-C11orf92-1:4
5.0 lnc-C11orf92-1:4
5.1 lnc-ARHGAP20-15:3
5.2 lnc-POU2AF1-1:4