Transcript: lnc-POTEG-14:17

Basic information

LNCipedia transcript ID: lnc-POTEG-14:17 
LNCipedia gene ID: lnc-POTEG-14
Location (hg38): chr14:19269274-19333733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 235 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT035499
Alternative gene names: FLJ39632


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.5068 non-coding 
CPAT coding probability 9.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POTEG-14:17 no no no no

Available literature

  1. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  2. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  3. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEM-2:23
4.0 LINC01296:23
4.1 LINC01296:23
5.0 LINC01296:23
5.1 lnc-TEP1-21:17
5.2 lnc-POTEG-14:17