Transcript: lnc-POMP-1:1

Basic information

LNCipedia transcript ID: lnc-POMP-1:1 
LNCipedia gene ID: lnc-POMP-1
Location (hg38): chr13:28719125-28724936
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1267 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500917; NONHSAT032706
Alternative gene names: ENSG00000246716; AL359454.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.1224 non-coding 
CPAT coding probability 27.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POMP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POMP-1:1
3.1 lnc-POMP-1:1
4.0 lnc-POMP-1:1
4.1 lnc-POMP-1:1
5.0 lnc-POMP-1:1
5.1 lnc-GTF3A-31:1
5.2 lnc-POMP-1:1