Transcript: lnc-POLR1E-2:1

Basic information

LNCipedia transcript ID: lnc-POLR1E-2:1 
LNCipedia gene ID: lnc-POLR1E-2
Ensembl Gene ID: ENSG00000234160
Ensembl Transcript ID: ENST00000413915
Location (hg38): chr9:37509150-37510299
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 289 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015668; ENST00000413915.1; RP11-613M10.6-001; OTTHUMT00000052470.1; NONHSAT131077
Alternative gene names: XLOC_007347; linc-FRMPD1; ENSG00000234160.1; RP11-613M10.6; OTTHUMG00000019924.1; AL513165.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.2684 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POLR1E-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR1E-1:1
3.1 lnc-POLR1E-2:1
4.0 lnc-POLR1E-2:1
4.1 lnc-POLR1E-2:1
5.0 lnc-POLR1E-2:1
5.1 lnc-POLR1E-2:1
5.2 lnc-POLR1E-2:1