Transcript: lnc-PNPLA5-6:3

Basic information

LNCipedia transcript ID: lnc-PNPLA5-6:3 
LNCipedia gene ID: lnc-PNPLA5-6
Location (hg38): chr22:43920655-43924614
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2670 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000058780.1|MICT00000234917.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.8578 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PNPLA5-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PNPLA5-6:3
5.0 lnc-PNPLA5-6:3
5.1 lnc-TCF20-23:2
5.2 lnc-PNPLA5-6:3