Transcript: lnc-PLXNA2-3:1

Basic information

LNCipedia transcript ID: lnc-PLXNA2-3:1 
LNCipedia gene ID: lnc-PLXNA2-3
Ensembl Gene ID: ENSG00000259815
Ensembl Transcript ID: ENST00000567538
Location (hg38): chr1:208626741-208628085
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567538.1; RP11-565N2.2-001; OTTHUMT00000088023.1; NONHSAT009171
Alternative gene names: ENSG00000259815.1; RP11-565N2.2; OTTHUMG00000036134.1; AC099793.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -233.919 non-coding 
CPAT coding probability 4.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLXNA2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLXNA2-3:1
4.0 lnc-PLXNA2-3:1
4.1 lnc-PLXNA2-3:1
5.0 lnc-PLXNA2-3:1
5.1 lnc-PLXNA2-3:1
5.2 lnc-PLXNA2-3:1