Transcript: lnc-PLGRKT-5:1

Basic information

LNCipedia transcript ID: lnc-PLGRKT-5:1 
LNCipedia gene ID: lnc-PLGRKT-5
Location (hg38): chr9:5566727-5618983
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1120 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_3731_chr9:5566726-5594934_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.587 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLGRKT-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf46-5:1
4.0 lnc-C9orf46-5:1
4.1 lnc-C9orf46-5:1
5.0 lnc-C9orf46-5:1
5.1 lnc-CER1-50:1
5.2 lnc-PLGRKT-5:1