Transcript: lnc-PLET1-1:1

Basic information

LNCipedia transcript ID: lnc-PLET1-1:1 
LNCipedia gene ID: lnc-PLET1-1
Location (hg38): chr11:112534222-112555802
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2065 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014
Alternative transcript names: ENST00000525984; ENST00000525984.1; RP11-65M17.1-001; OTTHUMT00000393670.1; NONHSAT024222; NR_104155
Alternative gene names: ENSG00000255484; RP11-65M17.1; ENSG00000255484.1; OTTHUMG00000167193.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.9505 non-coding 
CPAT coding probability 33.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLET1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C11orf34-1:1
3.1 lnc-C11orf34-1:1
4.0 lnc-C11orf34-1:1
4.1 lnc-C11orf34-1:1
5.0 lnc-C11orf34-1:1
5.1 lnc-DRD2-18:1
5.2 lnc-PLET1-1:1