Transcript: lnc-PLA2G2C-2:1

Basic information

LNCipedia transcript ID: lnc-PLA2G2C-2:1 
LNCipedia gene ID: lnc-PLA2G2C-2
Ensembl Gene ID: ENSG00000226664
Ensembl Transcript ID: ENST00000444923
Location (hg38): chr1:20294211-20323187
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 229 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444923.1; RP4-745E8.2-001; OTTHUMT00000007948.1; NONHSAT001358
Alternative gene names: ENSG00000226664.1; RP4-745E8.2; OTTHUMG00000002836.1; AL020998.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.9682 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PLA2G2C-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLA2G2C-2:1
4.0 lnc-PLA2G2C-2:1
4.1 lnc-PLA2G2C-2:1
5.0 lnc-PLA2G2C-2:1
5.1 lnc-CAMK2N1-2:12
5.2 lnc-PLA2G2C-2:1