Transcript: lnc-PKP1-1:2

Basic information

LNCipedia transcript ID: lnc-PKP1-1:2 
LNCipedia gene ID: lnc-PKP1-1
Ensembl Gene ID: ENSG00000282221
Ensembl Transcript ID: ENST00000633182
Location (hg38): chr1:201399633-201401190
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 556 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000633182.1
Alternative gene names: ENSG00000282221.1; RP11-27G14.4; AC119427.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -114.6487 non-coding 
CPAT coding probability 4.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PKP1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PKP1-1:2
4.1 lnc-PKP1-1:2
5.0 lnc-PKP1-1:2
5.1 lnc-ADORA1-56:2
5.2 lnc-PKP1-1:2