Transcript: lnc-PITRM1-7:2

Basic information

LNCipedia transcript ID: lnc-PITRM1-7:2 
LNCipedia gene ID: lnc-PITRM1-7
Location (hg38): chr10:2501775-2502164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018403; NONHSAT010984
Alternative gene names: XLOC_008688; linc-ADARB2-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4885 non-coding 
CPAT coding probability 23.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PITRM1-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PITRM1-7:1
3.1 lnc-PITRM1-7:2
4.0 lnc-PITRM1-7:2
4.1 lnc-PITRM1-7:2
5.0 lnc-PITRM1-7:2
5.1 lnc-KLF6-40:1
5.2 lnc-PITRM1-7:2