Transcript: lnc-PIPOX-4:11

Basic information

LNCipedia transcript ID: lnc-PIPOX-4:11 
LNCipedia gene ID: lnc-PIPOX-4
Ensembl Gene ID: ENSG00000265845
Ensembl Transcript ID: ENST00000592890
Location (hg38): chr17:28927750-28929972
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 313 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT052674; ENST00000592890.1
Alternative gene names: ENSG00000265845.2; RP11-20B24.5; AC024267.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.7534 non-coding 
CPAT coding probability 5.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIPOX-4:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERAL1-4:4
4.0 lnc-ERAL1-4:4
4.1 lnc-ERAL1-4:4
5.0 lnc-ERAL1-4:4
5.1 lnc-PIPOX-4:6
5.2 lnc-PIPOX-4:11