Transcript: lnc-PINK1-2:1

Basic information

LNCipedia transcript ID: lnc-PINK1-2:1 
LNCipedia gene ID: lnc-PINK1-2
Location (hg38): chr1:20742987-20743962
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000413451.1; RP5-930J4.4-001; OTTHUMT00000092372.1; NONHSAT001387
Alternative gene names: ENSG00000203394.2; RP5-930J4.4; OTTHUMG00000037842.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2785 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PINK1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PINK1-2:1
4.0 lnc-PINK1-2:1
4.1 lnc-PINK1-2:1
5.0 lnc-PINK1-2:1
5.1 lnc-NBPF3-16:1
5.2 lnc-PINK1-2:1