Transcript: lnc-PIKFYVE-4:3

Basic information

LNCipedia transcript ID: lnc-PIKFYVE-4:3 
LNCipedia gene ID: lnc-PIKFYVE-4
RefSeq ID: NR_038437
Location (hg38): chr2:208119129-208156762
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 437 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT076632; NR_038437; NR_038437.1
Alternative gene names: LOC100507443


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.9963 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIKFYVE-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIKFYVE-4:3
4.0 lnc-PIKFYVE-4:3
4.1 lnc-PIKFYVE-4:3
5.0 lnc-PIKFYVE-4:3
5.1 lnc-CPS1-26:3
5.2 lnc-PIKFYVE-4:3