Transcript: lnc-PIK3R1-3:1

Basic information

LNCipedia transcript ID: lnc-PIK3R1-3:1 
LNCipedia gene ID: lnc-PIK3R1-3
Location (hg38): chr5:68506235-68511792
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 336 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009987; NONHSAT101844
Alternative gene names: XLOC_004413; linc-SLC30A5-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -359.3434 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PIK3R1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIK3R1-2:1
3.1 lnc-PIK3R1-3:1
4.0 lnc-PIK3R1-3:1
4.1 lnc-PIK3R1-3:1
5.0 lnc-PIK3R1-3:1
5.1 lnc-NLN-42:3
5.2 lnc-PIK3R1-3:1