Transcript: lnc-PIGBOS1-1:1

Basic information

LNCipedia transcript ID: lnc-PIGBOS1-1:1 
LNCipedia gene ID: lnc-PIGBOS1-1
Location (hg38): chr15:55317322-55319161
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 801 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000567948.1; RP11-139H15.1-002; OTTHUMT00000419684.1; NONHSAT043988
Alternative gene names: ENSG00000225973.3; RP11-139H15.1; OTTHUMG00000172653.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.0777 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.682788086
seqAAMFRRLTFAQLLFATVLGIAGGVYIFQPVFEQYAKDQKELKEKMQLVQESEEKKS
covF1Prop0.153846154

In stringent set: no

Locus conservation

Locus conservation?
lnc-PIGBOS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCPG1-1:1
4.0 lnc-RAB27A-1:4
4.1 lnc-RAB27A-1:4
5.0 lnc-RAB27A-1:4
5.1 lnc-DNAAF4-8:1
5.2 lnc-PIGBOS1-1:1