Transcript: lnc-PHLDA3-1:1

Basic information

LNCipedia transcript ID: lnc-PHLDA3-1:1 
LNCipedia gene ID: lnc-PHLDA3-1
Ensembl Gene ID: ENSG00000224818
Ensembl Transcript ID: ENST00000430471
Location (hg38): chr1:201464383-201465146
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 598 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430471; ENST00000430471.1; RP11-134G8.8-001; OTTHUMT00000097763.1; NONHSAT008750
Alternative gene names: ENSG00000224818; RP11-134G8.8; ENSG00000224818.1; OTTHUMG00000040659.1; RP11-134G8.10; AC096677.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.6957 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PHLDA3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHLDA3-1:1
3.1 lnc-PHLDA3-1:1
4.0 lnc-PHLDA3-1:1
4.1 lnc-PHLDA3-1:1
5.0 lnc-PHLDA3-1:1
5.1 lnc-MYOG-51:1
5.2 lnc-PHLDA3-1:1