Transcript: lnc-PGS1-10:2

Basic information

LNCipedia transcript ID: lnc-PGS1-10:2 
LNCipedia gene ID: lnc-PGS1-10
Location (hg38): chr17:78324819-78326522
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1704 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000032530.1|ENCT00000178731.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.3654 non-coding 
CPAT coding probability 8.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PGS1-10:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PGS1-10:2
5.0 lnc-PGS1-10:2
5.1 lnc-ZACN-49:2
5.2 lnc-PGS1-10:2