Transcript: lnc-PER2-1:2

Basic information

LNCipedia transcript ID: lnc-PER2-1:2 
LNCipedia gene ID: lnc-PER2-1
Ensembl Gene ID: ENSG00000232306
Ensembl Transcript ID: ENST00000437372
Location (hg38): chr2:238295392-238300620
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 982 bp
Exons: 4
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437372.2
Alternative gene names: ENSG00000232306.2; AC012485.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -15.8854 non-coding 
CPAT coding probability 3.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PER2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PER2-1:2
5.0 lnc-PER2-1:2
5.1 lnc-ASB18-34:2
5.2 lnc-PER2-1:2