Transcript: lnc-PEF1-1:4

Basic information

LNCipedia transcript ID: lnc-PEF1-1:4 
LNCipedia gene ID: lnc-PEF1-1
Location (hg38): chr1:31577100-31579230
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1436 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229167.1|HBMT00000057609.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -156.8728 non-coding 
CPAT coding probability 70.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PEF1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PEF1-1:4
5.0 lnc-PEF1-1:4
5.1 lnc-COL16A1-7:3
5.2 lnc-PEF1-1:4