Transcript: lnc-PEAK1-1:15

Basic information

LNCipedia transcript ID: lnc-PEAK1-1:15 
LNCipedia gene ID: lnc-PEAK1-1
Location (hg38): chr15:77286422-77420176
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 317 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023744; NONHSAT047437
Alternative gene names: XLOC_011535; linc-PEAK1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.6989 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PEAK1-1:15 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PEAK1.1-1:5
3.1 lnc-PEAK1.1-1:5
4.0 lnc-PEAK1.1-1:5
4.1 lnc-PEAK1.1-1:5
5.0 lnc-PEAK1.1-1:5
5.1 lnc-PEAK1-1:5
5.2 lnc-PEAK1-1:15