Transcript: lnc-PDZD8-1:6

Basic information

LNCipedia transcript ID: lnc-PDZD8-1:6 
LNCipedia gene ID: lnc-PDZD8-1
Location (hg38): chr10:117238771-117241997
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1650 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225936.1|FTMT23700001347.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -156.4302 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD8-1:6 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PDZD8-1:6
5.0 lnc-PDZD8-1:6
5.1 lnc-NSMCE4A-84:4
5.2 lnc-PDZD8-1:6