Transcript: lnc-PDZD7-2:1

Basic information

LNCipedia transcript ID: lnc-PDZD7-2:1 
LNCipedia gene ID: lnc-PDZD7-2
Ensembl Gene ID: ENSG00000236662
Ensembl Transcript ID: ENST00000447344
Location (hg38): chr10:100980507-100985614
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 342 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447344.1; RP11-108L7.4-001; OTTHUMT00000049923.1; NONHSAT015991
Alternative gene names: ENSG00000236662.1; RP11-108L7.4; OTTHUMG00000018923.1; AL133215.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.7118 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD7-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD7-2:1
4.0 lnc-PDZD7-2:1
4.1 lnc-PDZD7-2:1
5.0 lnc-PDZD7-2:1
5.1 lnc-CPN1-36:1
5.2 lnc-PDZD7-2:1