Transcript: lnc-PDZD7-1:1

Basic information

LNCipedia transcript ID: lnc-PDZD7-1:1 
LNCipedia gene ID: lnc-PDZD7-1
Location (hg38): chr10:101002294-101007755
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 418 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438367.1; RP11-108L7.7-001; OTTHUMT00000049880.1; NONHSAT016003
Alternative gene names: ENSG00000224915.1; RP11-108L7.7; OTTHUMG00000018915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.3773 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD7-1:1
4.0 lnc-PDZD7-1:1
4.1 lnc-PDZD7-1:1
5.0 lnc-PDZD7-1:1
5.1 lnc-CPN1-38:1
5.2 lnc-PDZD7-1:1