Transcript: lnc-PDGFA-10:1

Basic information

LNCipedia transcript ID: lnc-PDGFA-10:1 
LNCipedia gene ID: lnc-PDGFA-10
Location (hg38): chr7:282671-284674
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2004 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003siq_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 96.3965 coding 
CPAT coding probability 10.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDGFA-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC145676.2.1-10:1
4.0 lnc-AC145676.2.1-10:1
4.1 lnc-AC145676.2.1-10:1
5.0 lnc-AC145676.2.1-10:1
5.1 lnc-PRKAR1B-10:1
5.2 lnc-PDGFA-10:1