Transcript: lnc-PDE7A-6:7

Basic information

LNCipedia transcript ID: lnc-PDE7A-6:7 
LNCipedia gene ID: lnc-PDE7A-6
Location (hg38): chr8:66019977-66022333
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2357 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000102657.1|ENCT00000435840.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.9321 non-coding 
CPAT coding probability 8.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE7A-6:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PDE7A-6:7
5.0 lnc-PDE7A-6:7
5.1 lnc-CPA6-27:4
5.2 lnc-PDE7A-6:7