Transcript: lnc-PDE6B-1:10

Basic information

LNCipedia transcript ID: lnc-PDE6B-1:10 
LNCipedia gene ID: lnc-PDE6B-1
Location (hg38): chr4:588717-617965
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00008729
Alternative gene names: XLOC_003411; linc-PDE6B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2398 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE6B-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDE6B-1:10
3.1 lnc-PDE6B-1:10
4.0 lnc-PDE6B-1:10
4.1 lnc-PDE6B-1:10
5.0 lnc-PDE6B-1:10
5.1 lnc-GPR78-137:23
5.2 lnc-PDE6B-1:10