Transcript: lnc-PDE1A-1:4

Basic information

LNCipedia transcript ID: lnc-PDE1A-1:4 
LNCipedia gene ID: lnc-PDE1A-1
Location (hg38): chr2:182672575-182674515
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT075911; FPKM1_group_17809_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7285 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDE1A-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDE1A-1:4
4.0 lnc-PDE1A-1:4
4.1 lnc-PDE1A-1:4
5.0 lnc-PDE1A-1:4
5.1 lnc-SESTD1-38:2
5.2 lnc-PDE1A-1:4